Package: scUtils 0.1.0.9000
scUtils: Utility Functions for Single-Cell RNA Sequencing Data
Analysis of single-cell RNA sequencing data can be simple and clear with the right utility functions. This package collects such functions, aiming to fulfill the following criteria: code clarity over performance (i.e. plain R code instead of C code), most important analysis steps over completeness (analysis 'by hand', not automated integration etc.), emphasis on quantitative visualization (intensity-coded color scale, etc.).
Authors:
scUtils_0.1.0.9000.tar.gz
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scUtils_0.1.0.9000.tgz(r-4.4-any)scUtils_0.1.0.9000.tgz(r-4.3-any)
scUtils_0.1.0.9000.tar.gz(r-4.5-noble)scUtils_0.1.0.9000.tar.gz(r-4.4-noble)
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scUtils.pdf |scUtils.html✨
scUtils/json (API)
NEWS
# Install 'scUtils' in R: |
install.packages('scUtils', repos = c('https://felixthestudent.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/felixthestudent/scutils/issues
Last updated 4 years agofrom:987d1ba6db. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 04 2024 |
R-4.5-win | OK | Nov 04 2024 |
R-4.5-linux | OK | Nov 04 2024 |
R-4.4-win | OK | Nov 04 2024 |
R-4.4-mac | OK | Nov 04 2024 |
R-4.3-win | OK | Nov 04 2024 |
R-4.3-mac | OK | Nov 04 2024 |
Exports:closed_breaks_log2closed_labelscolVars_spmfeatrowVars_spm
Dependencies:assertthatclicolorspacedplyrfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Closed breaks for log scale | closed_breaks_log2 |
Human-readable labels for closed breaks | closed_labels |
Variance computation for sparse matrices | colVars_spm rowVars_spm |
Feature Plot | feat |
Check if number(s) is/are integers. In contrast to is.integer, is_wholenumber does not check the class but accepts all numbers that are integers with reasonable precision. | is_wholenumber |